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projects

Meta’omics applied to Brazilian Bos indicus: Exploring the unknown diversity of rumen microbiome and its relationship with the metabolome

Published: February 18, 2019

The Nelore hologenome: implications in beef quality and feed efficiency

Published: January 30, 2020

Prediction of host phenotypic outcomes with Machine learning

Published: December 01, 2020

PigInvest: A digital decision support tool for the pig industry based on bio-economic stochastic simulation models

Published: March 05, 2022

publications

Polyketide synthase gene diversity within the microbiome of the sponge Arenosclera brasiliensis, endemic to the Southern Atlantic Ocean.

Applied and Environmental Microbiology - 2013

Worldwide occurrence of integrative conjugative element encoding multidrug resistance determinants in epidemic Vibrio cholerae O1.

Plos One - 2014

The genome of a clinical Klebsiella variicola strain reveals virulence-associated traits and a pl9-like plasmid.

FEMS microbiology letters - 2014

Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions.

BMC Genomics - 2014

Complete genome sequence of a clinical Bordetella pertussis isolate from Brazil.

Memórias do Instituto Oswaldo Cruz - 2014

A one-step multiplex PCR to identify Klebsiella pneumoniae, Klebsiella variicola, and Klebsiella quasipneumoniae in the clinical routine.

Diagnostic Microbiology and Infectious Disease - 2017

ImmunoAdept–bringing blood microbiome profiling to the clinical practice.

2018 IEEE International Conference on Bioinformatics and Biomedicine - 2018

The Resistome of Low-Impacted Marine Environments Is Composed by Distant Metallo-β-Lactamases Homologs.

Frontiers in Microbiology - 2018

Co-expression networks reveals potential regulatory roles of miRNAs in fatty acids composition of Nelore cattle.

Frontiers in Genetics - 2019

Muscle transcriptome analysis reveals genes and metabolic pathways related to mineral concentration in Bos indicus.

Frontiers in Genetics - 2019

Global ocean resistome revealed: Exploring antibiotic resistance gene abundance and distribution in TARA Oceans samples.

GigaScience - 2020

Allele-specific expression is widespread in Bos indicus muscle and affects meat quality candidate genes.

Scientific Reports - 2020

The structure of microbial populations in Nelore GIT reveals inter-dependency of methanogens in feces and rumen.

Journal of animal science and biotechnology - 2020

Fecal and Ruminal Microbiome Components Associated With Methane Emission in Beef Cattle.

preprint - 2020

Multi-Omics Approach Reveals miR-SNPs Affecting Muscle Fatty Acids Profile in Nelore Cattle.

Genes - 2021

Understanding the Role of (Advanced) Machine Learning in Metagenomic Workflows.

Genes - 2021

Putative mobilized colistin resistance genes in the human gut microbiome.

BMC Microbiology - 2021

Nasopharyngeal Microbial Communities of Patients Infected With SARS-CoV-2 That Developed COVID-19.

Frontiers in Microbiology - 2021

Dolosigranulum pigrum Modulates Immunity against SARS-CoV-2 in Respiratory Epithelial Cells.

Pathogens - 2021

Immunobiotic Lactobacilli Improve Resistance of Respiratory Epithelial Cells to SARS-CoV-2 Infection.

Pathogens - 2021

The role of respiratory microbiota in the protection against viral diseases: respiratory commensal bacteria as next-generation probiotics for COVID-19.

Bioscience of Microbiota Food and Health - 2022

Stool and Ruminal Microbiome Components Associated With Methane Emission and Feed Efficiency in Nelore Beef Cattle.

Frontiers in Genetics - 2022

BiGAMi: Bi-Objective Genetic Algorithm Fitness Function for Feature Selection on Microbiome Datasets.

Methods and Protocols - 2022

Genomic and Immunological Characterization of Hypermucoviscous Carbapenem-Resistant Klebsiella pneumoniae ST25 Isolates from Northwest Argentina.

International Journal of Molecular Sciences - 2022

supervision

Using Bi-Objective Genetic Algorithm Fitness Function for Feature Selection on Microbiome Datasets

Published: January 01, 2021

A resume recommender system based on link prediction and greedy reranking.

Published: January 01, 2021

Rumen metatranscriptomics of Nelore and its relation with performance in confinement

Published: July 01, 2021

Multi Q-Learning: Ensemble Reinforcement Learning for Stock Market Trading

Published: January 01, 2022

talks

Microbiome, Health and Data Science: Current applications and future prospects

Published: September 11, 2021

Harnessing the microbiome for novel biomarkers and probiotics

Published: October 06, 2021

teaching

Bioinformatics and metagenomics

State University of the West Zone, Workshop - 2012

Genomic data analysis using High perfomance computers

Oswaldo Cruz Institute, Short course - 2017

Genomic data analysis using High perfomance computers

Oswaldo Cruz Institute, Short course - 2017

Genomic data analysis using High perfomance computers

Intel headquarters, Short course - 2018

Workshop Linux - Python

Embrapa southeast livestock, Workshop - 2018

Web Development Fundamentals

Munster Technological University, University Module - 2021

Data Processing and Visualisation

Munster Technological University, University Module - 2022

Dr. Bruno Andrade

Senior Researcher

Posts by Collection

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